Although not exhaustive, this video features lots of details on the changes EX characters have over their regular counterparts. As there doesn't seem to be a huge amount of info about this online, most of it just comes from doing a ton of testing.
Going back to Alpha 2 reminded me of how awesome it was. Incredible soundtrack, lots of great background details and easter eggs. Best in the alpha series, in my opinion.
Thanks for watching!
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0:00 - Cammy
0:44 - Shin Akuma
1:25 - Evil Ryu
2:12 - Alt Chun Li
2:49 - EX Character Intro
3:15 - EX Ryu & EX Ken
4:23 - EX M. Bison
5:08 - EX Chun Li
5:54 - Alt Sakura
6:12 - EX Sagat
6:59 - EX Zangief
7:36 - EX Dhalsim